STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CU098_002812RRM domain-containing protein. (427 aa)    
Predicted Functional Partners:
UPF1
ATP-dependent helicase NAM7.
    
 0.906
CU098_000614
RRM domain-containing protein.
   
 0.876
CBP80_1
Component of the cap-binding complex (CBC).
    
 0.853
CBP80_2
Component of the cap-binding complex (CBC).
    
 0.853
PAN3_2
PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...]
    
 0.851
PAN3_1
PAB-dependent poly(A)-specific ribonuclease subunit 3.
    
 0.851
TIF1_2
Translation initiation factor eIF4A.
   
 0.846
TIF1_1
Translation initiation factor eIF4A; Belongs to the DEAD box helicase family.
   
 0.846
CNOT7
CCR4-NOT transcription complex subunit 7.
    
 0.825
CU098_000249
LsmAD domain-containing protein.
   
 
 0.821
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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