CU098_003678 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CU098_003678

BRF1 domain-containing protein. (342 aa)

Predicted Functional Partners:

BDP1

0.989

RPC34

0.989

CU098_013706

0.987

CU098_003147

0.982

CU098_002086

0.982

TFC4_1

0.981

POLR1C

0.981

TFC4_2

0.981

CU098_008581

0.975

RET1_2

0.974

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDP1	CU098_002086	A0A367K5K7	A0A367J4P3	Transcription factor TFIIIB component B.	Uncharacterized protein.	0.989
BDP1	CU098_003147	A0A367K5K7	A0A367ISW8	Transcription factor TFIIIB component B.	BTB domain-containing protein.	0.989
BDP1	CU098_003678	A0A367K5K7	A0A367IPH6	Transcription factor TFIIIB component B.	BRF1 domain-containing protein.	0.989
BDP1	CU098_008581	A0A367K5K7	A0A367KAR7	Transcription factor TFIIIB component B.	Uncharacterized protein.	0.996
BDP1	CU098_013706	A0A367K5K7	A0A367KXF1	Transcription factor TFIIIB component B.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
BDP1	POLR1C	A0A367K5K7	A0A367JFF8	Transcription factor TFIIIB component B.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.995
BDP1	RET1_2	A0A367K5K7	A0A367KLS4	Transcription factor TFIIIB component B.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.984
BDP1	RPC34	A0A367K5K7	A0A367KN73	Transcription factor TFIIIB component B.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.996
BDP1	TFC4_1	A0A367K5K7	A0A367J358	Transcription factor TFIIIB component B.	Transcription factor TFIIIC subunit tfc4.	0.962
BDP1	TFC4_2	A0A367K5K7	A0A367KQS5	Transcription factor TFIIIB component B.	Transcription factor TFIIIC subunit tfc4.	0.962
CU098_002086	BDP1	A0A367J4P3	A0A367K5K7	Uncharacterized protein.	Transcription factor TFIIIB component B.	0.989
CU098_002086	CU098_003678	A0A367J4P3	A0A367IPH6	Uncharacterized protein.	BRF1 domain-containing protein.	0.982
CU098_002086	CU098_008581	A0A367J4P3	A0A367KAR7	Uncharacterized protein.	Uncharacterized protein.	0.944
CU098_002086	CU098_013706	A0A367J4P3	A0A367KXF1	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.952
CU098_002086	POLR1C	A0A367J4P3	A0A367JFF8	Uncharacterized protein.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.979
CU098_002086	RET1_2	A0A367J4P3	A0A367KLS4	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.902
CU098_002086	RPC34	A0A367J4P3	A0A367KN73	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.979
CU098_002086	TFC4_1	A0A367J4P3	A0A367J358	Uncharacterized protein.	Transcription factor TFIIIC subunit tfc4.	0.820
CU098_002086	TFC4_2	A0A367J4P3	A0A367KQS5	Uncharacterized protein.	Transcription factor TFIIIC subunit tfc4.	0.820
CU098_003147	BDP1	A0A367ISW8	A0A367K5K7	BTB domain-containing protein.	Transcription factor TFIIIB component B.	0.989