CU098_002565 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CU098_002565

Uncharacterized protein. (443 aa)

Predicted Functional Partners:

SRXN1

0.941

TRX2_2

0.931

TRX2_1

0.931

TRR1_1

0.876

CU098_004726

0.874

CU098_008900

0.874

CU098_013849

0.874

CU098_003322

0.817

CU098_012741

0.817

CU098_006077

0.806

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CU098_002565	CU098_003322	A0A367IPR2	A0A367IKJ4	Uncharacterized protein.	Uncharacterized protein.	0.817
CU098_002565	CU098_004726	A0A367IPR2	A0A367IIM4	Uncharacterized protein.	Uncharacterized protein.	0.874
CU098_002565	CU098_006077	A0A367IPR2	A0A367KKI3	Uncharacterized protein.	Uncharacterized protein.	0.806
CU098_002565	CU098_008900	A0A367IPR2	A0A367JA32	Uncharacterized protein.	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	0.874
CU098_002565	CU098_012741	A0A367IPR2	A0A367KP08	Uncharacterized protein.	Thioredoxin; Belongs to the thioredoxin family.	0.817
CU098_002565	CU098_013849	A0A367IPR2	A0A367KX01	Uncharacterized protein.	Uncharacterized protein.	0.874
CU098_002565	SRXN1	A0A367IPR2	A0A367JF51	Uncharacterized protein.	Sulfiredoxin.	0.941
CU098_002565	TRR1_1	A0A367IPR2	A0A367K4H0	Uncharacterized protein.	Thioredoxin-disulfide reductase.	0.876
CU098_002565	TRX2_1	A0A367IPR2	A0A367KME6	Uncharacterized protein.	Thioredoxin; Belongs to the thioredoxin family.	0.931
CU098_002565	TRX2_2	A0A367IPR2	A0A367JRN7	Uncharacterized protein.	Thioredoxin; Belongs to the thioredoxin family.	0.931
CU098_003322	CU098_002565	A0A367IKJ4	A0A367IPR2	Uncharacterized protein.	Uncharacterized protein.	0.817
CU098_003322	CU098_004726	A0A367IKJ4	A0A367IIM4	Uncharacterized protein.	Uncharacterized protein.	0.801
CU098_003322	CU098_006077	A0A367IKJ4	A0A367KKI3	Uncharacterized protein.	Uncharacterized protein.	0.652
CU098_003322	CU098_008900	A0A367IKJ4	A0A367JA32	Uncharacterized protein.	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	0.801
CU098_003322	CU098_013849	A0A367IKJ4	A0A367KX01	Uncharacterized protein.	Uncharacterized protein.	0.801
CU098_003322	TRR1_1	A0A367IKJ4	A0A367K4H0	Uncharacterized protein.	Thioredoxin-disulfide reductase.	0.873
CU098_003322	TRX2_1	A0A367IKJ4	A0A367KME6	Uncharacterized protein.	Thioredoxin; Belongs to the thioredoxin family.	0.966
CU098_003322	TRX2_2	A0A367IKJ4	A0A367JRN7	Uncharacterized protein.	Thioredoxin; Belongs to the thioredoxin family.	0.966
CU098_004726	CU098_002565	A0A367IIM4	A0A367IPR2	Uncharacterized protein.	Uncharacterized protein.	0.874
CU098_004726	CU098_003322	A0A367IIM4	A0A367IKJ4	Uncharacterized protein.	Uncharacterized protein.	0.801