SMARCAL1 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SMARCAL1

SWI/SNF-matrix-associated actin-dependent regulator of chromatin sub A-like protein 1. (507 aa)

Predicted Functional Partners:

CU098_010431

0.904

CU098_004720

0.904

POL30

0.884

MPH1_1

0.877

MPH1_2

0.877

CU098_006228

0.842

RFA2

0.827

RFA1_1

0.820

RFA1_2

0.820

CRP79

0.794

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRP79	CU098_004720	A0A367J4J6	A0A367KSL4	Poly(A) binding protein Crp79.	3'-5' exonuclease domain-containing protein.	0.765
CRP79	CU098_006228	A0A367J4J6	A0A367KVY4	Poly(A) binding protein Crp79.	Uncharacterized protein.	0.928
CRP79	CU098_010431	A0A367J4J6	A0A367K9S9	Poly(A) binding protein Crp79.	3'-5' exonuclease domain-containing protein.	0.765
CRP79	MPH1_1	A0A367J4J6	A0A367KLD7	Poly(A) binding protein Crp79.	3'-5' DNA helicase.	0.968
CRP79	MPH1_2	A0A367J4J6	A0A367KVR1	Poly(A) binding protein Crp79.	3'-5' DNA helicase.	0.968
CRP79	POL30	A0A367J4J6	A0A367J010	Poly(A) binding protein Crp79.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.973
CRP79	RFA1_1	A0A367J4J6	A0A367KQX5	Poly(A) binding protein Crp79.	Replication factor A protein 1.	0.596
CRP79	RFA1_2	A0A367J4J6	A0A367KWW3	Poly(A) binding protein Crp79.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.596
CRP79	RFA2	A0A367J4J6	A0A367KQA5	Poly(A) binding protein Crp79.	Replication factor A protein 2.	0.768
CRP79	SMARCAL1	A0A367J4J6	A0A367IQL2	Poly(A) binding protein Crp79.	SWI/SNF-matrix-associated actin-dependent regulator of chromatin sub A-like protein 1.	0.794
CU098_004720	CRP79	A0A367KSL4	A0A367J4J6	3'-5' exonuclease domain-containing protein.	Poly(A) binding protein Crp79.	0.765
CU098_004720	CU098_006228	A0A367KSL4	A0A367KVY4	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.988
CU098_004720	CU098_010431	A0A367KSL4	A0A367K9S9	3'-5' exonuclease domain-containing protein.	3'-5' exonuclease domain-containing protein.	0.913
CU098_004720	MPH1_1	A0A367KSL4	A0A367KLD7	3'-5' exonuclease domain-containing protein.	3'-5' DNA helicase.	0.994
CU098_004720	MPH1_2	A0A367KSL4	A0A367KVR1	3'-5' exonuclease domain-containing protein.	3'-5' DNA helicase.	0.994
CU098_004720	POL30	A0A367KSL4	A0A367J010	3'-5' exonuclease domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.988
CU098_004720	RFA1_1	A0A367KSL4	A0A367KQX5	3'-5' exonuclease domain-containing protein.	Replication factor A protein 1.	0.987
CU098_004720	RFA1_2	A0A367KSL4	A0A367KWW3	3'-5' exonuclease domain-containing protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.987
CU098_004720	RFA2	A0A367KSL4	A0A367KQA5	3'-5' exonuclease domain-containing protein.	Replication factor A protein 2.	0.979
CU098_004720	SMARCAL1	A0A367KSL4	A0A367IQL2	3'-5' exonuclease domain-containing protein.	SWI/SNF-matrix-associated actin-dependent regulator of chromatin sub A-like protein 1.	0.904