Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CU098_002529IFRD domain-containing protein. (417 aa)    
Predicted Functional Partners:
VPS29
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.745
CU098_013500
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.745
CRP79
Poly(A) binding protein Crp79.
    
  0.740
CU098_003358
Uncharacterized protein.
    
 0.717
ZZZ3_2
ZZ-type zinc finger-containing protein 3.
    
 0.717
ZZZ3_1
ZZ-type zinc finger-containing protein 3.
    
 0.717
CU098_002121
J domain-containing protein.
    
 0.717
CU098_010939
SANT domain-containing protein.
    
 0.717
CU098_008858
J domain-containing protein.
    
 0.717
TCEB1
Transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C); Belongs to the SKP1 family.
     
 0.709
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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