STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU098_004371F-box domain-containing protein. (310 aa)    
Predicted Functional Partners:
CU098_007433
Uncharacterized protein; Belongs to the SKP1 family.
   
 0.827
CU098_002195
Photolyase/cryptochrome alpha/beta domain-containing protein.
    
 0.746
TCEB1
Transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C); Belongs to the SKP1 family.
    
 0.681
CU098_004432
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.662
CU098_003320
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.662
CU098_009343
Cullin domain-containing protein; Belongs to the cullin family.
    
 0.662
CUL3
Cullin-3; Belongs to the cullin family.
    
 0.662
NEDD8
Nedd8-conjugating enzyme UBE2F.
    
 0.640
CU098_012679
Ubiquitin-like domain-containing protein.
    
 0.640
CAND1
Cullin-associated NEDD8-dissociated protein 1.
    
 0.599
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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