STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPATCH4G patch domain-containing protein 4. (299 aa)    
Predicted Functional Partners:
PRP43
DEAH-box ATP-dependent RNA helicase prp43.
   
 
 0.977
UTP7_2
Small subunit (SSU) processome component.
   
   0.967
UTP7_1
Small subunit (SSU) processome component.
   
   0.967
SNU13
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
   0.964
ENP1_1
SnoRNA-binding rRNA-processing protein.
   
   0.955
CU098_000565
Uncharacterized protein.
   
   0.955
ENP1_2
SnoRNA-binding rRNA-processing protein.
   
   0.955
SGD1_2
Suppressor of glycerol defect.
   
   0.953
SGD1_1
Suppressor of glycerol defect.
   
   0.953
FAL1_1
RNA helicase; Belongs to the DEAD box helicase family.
   
   0.945
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.