STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GPATCH4G patch domain-containing protein 4. (299 aa)    
Predicted Functional Partners:
MAK16_1
Protein MAK16; Belongs to the MAK16 family.
   
   0.957
MAK16_2
Protein MAK16; Belongs to the MAK16 family.
   
   0.957
PRP43
DEAH-box ATP-dependent RNA helicase prp43.
   
 
 0.949
MIS3
Ribosomal RNA assembly protein mis3.
   
 
 0.948
DBP9
ATP-dependent DNA/RNA helicase.
   
   0.942
NOP4
RNA recognition motif-containing protein.
   
   0.939
CU098_003560
Uncharacterized protein.
   
   0.938
SURF6
Surfeit locus protein.
   
   0.938
CU098_010983
RRM domain-containing protein.
   
   0.932
SPB1_1
AdoMet-dependent rRNA methyltransferase spb1.
   
   0.931
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.