STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU098_005365LigB domain-containing protein. (276 aa)    
Predicted Functional Partners:
CU098_011875
Uncharacterized protein.
     
  0.797
CU098_009535
FMN hydroxy acid dehydrogenase domain-containing protein.
   
  0.669
CU098_006754
Uncharacterized protein.
   
  0.669
DFR1
Dihydrofolate reductase; Belongs to the dihydrofolate reductase family.
    
 0.556
GPD2
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.505
GPD1_3
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.505
GPD3
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.505
CU098_002503
Homoserine_dh domain-containing protein.
     
  0.491
CU098_001887
Aminotran_5 domain-containing protein.
  
 
  0.485
AIFM1
Apoptosis-inducing factor 1, mitochondrial.
   
 
  0.473
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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