Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TCF25_1Transcription factor 25. (575 aa)    
Predicted Functional Partners:
CU098_002555
RING-CH-type domain-containing protein.
   
 0.980
CU098_010885
Uncharacterized protein.
   
 0.980
CU098_000508
Uncharacterized protein.
   
 0.980
CU098_006303
RING-CH-type domain-containing protein.
   
 0.980
RPL32
60S ribosomal protein L32.
    
  0.918
CU098_000033
Ribosomal_L16 domain-containing protein.
    
  0.918
CU098_012074
60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.
    
 0.913
RPL5
60S ribosomal protein L5.
    
  0.911
CU098_002542
Ribos_L4_asso_C domain-containing protein.
    
  0.898
CU098_008465
Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.
    
 0.886
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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