STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MTR4_2ATP-dependent RNA helicase mtr4. (229 aa)    
Predicted Functional Partners:
EXOSC7
Exosome complex component RRP42.
   
 0.982
CU098_006320
WD_REPEATS_REGION domain-containing protein.
   
 0.982
CU098_005770
WD_REPEATS_REGION domain-containing protein.
   
 0.982
WDR75
WD repeat-containing protein 75.
   
 0.977
BMS1_1
Glycoside hydrolase 2 (Mannanase, beta-galactosidase).
   
 0.975
BMS1_2
Glycoside hydrolase 2 (Mannanase, beta-galactosidase).
   
 0.975
EXOSC5
Exosome component 5.
   
 0.975
CU098_011371
Uncharacterized protein.
    
 0.974
CU098_011407
Uncharacterized protein.
   
 0.974
CU098_012555
Uncharacterized protein.
   
 0.974
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.