STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LEO1_1Paf1 complex component. (354 aa)    
Predicted Functional Partners:
CU098_007377
CDC73_N domain-containing protein.
   
 0.999
CTR9_1
Protein required for normal CLN1 and CLN2 G1 cyclin expression.
   
 0.998
CTR9_2
Protein required for normal CLN1 and CLN2 G1 cyclin expression; Belongs to the membrane-bound acyltransferase family.
   
 0.998
CU098_000622
Uncharacterized protein.
   
 0.997
SPT16
FACT complex subunit spt16.
   
 0.997
PAF1
RNA polymerase-associated factor.
   
 0.997
CU098_001247
Uncharacterized protein.
   
 0.996
POB3
FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]
   
 0.996
CU098_012916
Uncharacterized protein.
    
 0.990
RTF1
RNA polymerase-associated protein rtf1.
   
 0.989
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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