STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MIP1_1DNA-directed DNA polymerase gamma mip1. (646 aa)    
Predicted Functional Partners:
CU098_011004
Uncharacterized protein.
   
 0.948
CU098_009695
AA_TRNA_LIGASE_II domain-containing protein.
    
 0.946
GRS1_2
Glycine--tRNA ligase 1, mitochondrial.
    
 0.946
GRS1_1
Glycine--tRNA ligase 1, mitochondrial.
    
 0.946
CU098_004081
SF4 helicase domain-containing protein.
   
 
 0.848
MPH1_1
3'-5' DNA helicase.
   
 
 0.823
MPH1_2
3'-5' DNA helicase.
   
 
 0.823
RPO41_1
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.
  
 
 0.815
RPO41_2
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.
  
 
 0.815
RNASEH1_1
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
    
 0.810
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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