STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CU098_001150Uncharacterized protein. (419 aa)    
Predicted Functional Partners:
CU098_001866
Uncharacterized protein.
 
  
  0.974
ELP3_1
Elongator subunit.
   
 0.968
ELP3_2
Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.
   
 0.968
CU098_000042
Uncharacterized protein.
   
 0.957
ELP4
Elongator subunit elp4.
   
 0.957
ELP2_2
Elongator subunit elp2.
   
 0.955
ELP2_1
Elongator subunit elp2.
   
 0.955
ELP6
Elongator subunit elp6.
    
 0.955
ELP5
Elongator complex protein.
   
 0.937
KTI12
Kti12, chromatin associated.
    
 
 0.906
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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