STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAD50DNA repair protein rad50. (619 aa)    
Predicted Functional Partners:
MRE11A_1
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
  
 0.996
MRE11A_2
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
  
 0.996
CU098_010431
3'-5' exonuclease domain-containing protein.
  
 0.988
CU098_004720
3'-5' exonuclease domain-containing protein.
  
 0.988
CU098_001151
Uncharacterized protein.
    
 0.977
RAD52
DNA repair protein rad52.
    
 0.977
CU098_008556
Uncharacterized protein.
   
 0.972
SGS1
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
  
 0.972
EXO1
Rad2 nuclease.
  
 0.971
MEC1_1
Serine/threonine-protein kinase M1.
   
 0.959
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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