CU098_000657 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CU098_000657

Uncharacterized protein. (673 aa)

Predicted Functional Partners:

CU098_012116

0.952

RAC1_2

0.910

CU098_003158

0.910

CU098_007832

0.910

CU098_005027

0.910

RAC1_1

0.910

RHO1_4

0.910

CU098_006098

0.910

RHO3

0.910

RAC1_3

0.910

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CU098_000657	CU098_003158	A0A367IX49	A0A367IMF1	Uncharacterized protein.	Uncharacterized protein.	0.910
CU098_000657	CU098_005027	A0A367IX49	A0A367IQ98	Uncharacterized protein.	Uncharacterized protein.	0.910
CU098_000657	CU098_006098	A0A367IX49	A0A367IWP7	Uncharacterized protein.	Uncharacterized protein.	0.910
CU098_000657	CU098_007832	A0A367IX49	A0A367IMW9	Uncharacterized protein.	Myb-like domain-containing protein.	0.910
CU098_000657	CU098_012116	A0A367IX49	A0A367KW71	Uncharacterized protein.	Uncharacterized protein.	0.952
CU098_000657	RAC1_1	A0A367IX49	A0A367IV43	Uncharacterized protein.	Rho GTPase protein rac1.	0.910
CU098_000657	RAC1_2	A0A367IX49	A0A367IKG7	Uncharacterized protein.	Rho GTPase protein rac1.	0.910
CU098_000657	RAC1_3	A0A367IX49	A0A367JQW0	Uncharacterized protein.	Rho GTPase protein rac1.	0.910
CU098_000657	RHO1_4	A0A367IX49	A0A367IVZ7	Uncharacterized protein.	GTP-binding protein Rho1.	0.910
CU098_000657	RHO3	A0A367IX49	A0A367J0Y1	Uncharacterized protein.	Rho GTPase.	0.910
CU098_003158	CU098_000657	A0A367IMF1	A0A367IX49	Uncharacterized protein.	Uncharacterized protein.	0.910
CU098_003158	CU098_012116	A0A367IMF1	A0A367KW71	Uncharacterized protein.	Uncharacterized protein.	0.910
CU098_005027	CU098_000657	A0A367IQ98	A0A367IX49	Uncharacterized protein.	Uncharacterized protein.	0.910
CU098_005027	CU098_012116	A0A367IQ98	A0A367KW71	Uncharacterized protein.	Uncharacterized protein.	0.910
CU098_006098	CU098_000657	A0A367IWP7	A0A367IX49	Uncharacterized protein.	Uncharacterized protein.	0.910
CU098_006098	CU098_012116	A0A367IWP7	A0A367KW71	Uncharacterized protein.	Uncharacterized protein.	0.910
CU098_007832	CU098_000657	A0A367IMW9	A0A367IX49	Myb-like domain-containing protein.	Uncharacterized protein.	0.910
CU098_007832	CU098_012116	A0A367IMW9	A0A367KW71	Myb-like domain-containing protein.	Uncharacterized protein.	0.910
CU098_012116	CU098_000657	A0A367KW71	A0A367IX49	Uncharacterized protein.	Uncharacterized protein.	0.952
CU098_012116	CU098_003158	A0A367KW71	A0A367IMF1	Uncharacterized protein.	Uncharacterized protein.	0.910