STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CIR1_4Putative electron transfer flavoprotein subunit. (342 aa)    
Predicted Functional Partners:
HIS2AV
Histone H2A; Belongs to the histone H2A family.
    
 0.698
HHT1_1
Histone H3; Belongs to the histone H3 family.
    
 0.666
HHT1_2
Histone H3.1.
    
 0.666
CU098_011491
Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.
    
  0.664
GLRX3
Glutaredoxin 3.
    
 
 0.649
DOA4_3
Ubiquitin-specific protease doa4.
    
  0.648
DOA4_2
Ubiquitin carboxyl-terminal hydrolase.
    
  0.648
DOA4_1
Ubiquitin-specific protease doa4; Belongs to the peptidase C19 family.
    
  0.648
DOA4_4
Ubiquitin carboxyl-terminal hydrolase.
    
  0.648
PTGES3
Prostaglandin E synthase 3 (Cytosolic).
    
  0.645
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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