RAB2A protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RAB2A

Ras-protein Rab-2A. (193 aa)

Predicted Functional Partners:

CU098_010570

0.942

CU098_013838

0.942

NCA2

0.892

CU098_006748

0.889

CU098_007494

0.889

CU098_013530

0.888

SEC4

0.844

RAB6_1

0.839

RAB6_2

0.839

VAM6_2

0.835

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CU098_006748	CU098_007494	A0A367IL51	A0A367JLS0	Rho-GAP domain-containing protein.	Uncharacterized protein.	0.915
CU098_006748	RAB2A	A0A367IL51	A0A367IXF3	Rho-GAP domain-containing protein.	Ras-protein Rab-2A.	0.889
CU098_006748	RAB6_1	A0A367IL51	A0A367ILY0	Rho-GAP domain-containing protein.	Ras-protein Rab6.	0.403
CU098_006748	RAB6_2	A0A367IL51	A0A367KW85	Rho-GAP domain-containing protein.	Ras-protein Rab6.	0.403
CU098_007494	CU098_006748	A0A367JLS0	A0A367IL51	Uncharacterized protein.	Rho-GAP domain-containing protein.	0.915
CU098_007494	RAB2A	A0A367JLS0	A0A367IXF3	Uncharacterized protein.	Ras-protein Rab-2A.	0.889
CU098_007494	RAB6_1	A0A367JLS0	A0A367ILY0	Uncharacterized protein.	Ras-protein Rab6.	0.403
CU098_007494	RAB6_2	A0A367JLS0	A0A367KW85	Uncharacterized protein.	Ras-protein Rab6.	0.403
CU098_010570	CU098_013530	A0A367JRH9	A0A367KY19	Uncharacterized protein.	Uncharacterized protein.	0.947
CU098_010570	NCA2	A0A367JRH9	A0A367KPU2	Uncharacterized protein.	Nuclear control of ATPase protein 2.	0.549
CU098_010570	RAB2A	A0A367JRH9	A0A367IXF3	Uncharacterized protein.	Ras-protein Rab-2A.	0.942
CU098_010570	RAB6_1	A0A367JRH9	A0A367ILY0	Uncharacterized protein.	Ras-protein Rab6.	0.678
CU098_010570	RAB6_2	A0A367JRH9	A0A367KW85	Uncharacterized protein.	Ras-protein Rab6.	0.678
CU098_010570	SEC4	A0A367JRH9	A0A367IP89	Uncharacterized protein.	GTP-binding protein.	0.549
CU098_010570	VAM6_2	A0A367JRH9	A0A367KQL2	Uncharacterized protein.	Vacuolar morphoproteinsis protein 6.	0.869
CU098_013530	CU098_010570	A0A367KY19	A0A367JRH9	Uncharacterized protein.	Uncharacterized protein.	0.947
CU098_013530	CU098_013838	A0A367KY19	A0A367KW58	Uncharacterized protein.	Uncharacterized protein.	0.947
CU098_013530	NCA2	A0A367KY19	A0A367KPU2	Uncharacterized protein.	Nuclear control of ATPase protein 2.	0.839
CU098_013530	RAB2A	A0A367KY19	A0A367IXF3	Uncharacterized protein.	Ras-protein Rab-2A.	0.888
CU098_013530	RAB6_1	A0A367KY19	A0A367ILY0	Uncharacterized protein.	Ras-protein Rab6.	0.826