CU098_001515 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CU098_001515

Rhodanese domain-containing protein. (151 aa)

Predicted Functional Partners:

SOD2_1

0.966

SOD2_2

0.966

CU098_008110

0.958

CU098_001957

0.954

CU098_003874

0.951

MRPL3

0.947

MRPL23

0.946

CU098_007946

0.943

MRPL51

0.939

ERT1_5

0.939

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CU098_001515	CU098_001957	A0A367J2G8	A0A367KLI3	Rhodanese domain-containing protein.	Uncharacterized protein.	0.954
CU098_001515	CU098_003874	A0A367J2G8	A0A367IJG9	Rhodanese domain-containing protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.951
CU098_001515	CU098_007946	A0A367J2G8	A0A367JSC2	Rhodanese domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.943
CU098_001515	CU098_008110	A0A367J2G8	A0A367KYG2	Rhodanese domain-containing protein.	Uncharacterized protein.	0.958
CU098_001515	ERT1_5	A0A367J2G8	A0A367KUV5	Rhodanese domain-containing protein.	Transcriptional regulator of nonfermentable carbon utilization.	0.939
CU098_001515	MRPL23	A0A367J2G8	A0A367J1R0	Rhodanese domain-containing protein.	54S ribosomal protein L23, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	0.946
CU098_001515	MRPL3	A0A367J2G8	A0A367IKB0	Rhodanese domain-containing protein.	54S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.947
CU098_001515	MRPL51	A0A367J2G8	A0A367IT63	Rhodanese domain-containing protein.	39S ribosomal protein L51, mitochondrial.	0.939
CU098_001515	SOD2_1	A0A367J2G8	A0A367JRK1	Rhodanese domain-containing protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.966
CU098_001515	SOD2_2	A0A367J2G8	A0A367KM47	Rhodanese domain-containing protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.966
CU098_001957	CU098_001515	A0A367KLI3	A0A367J2G8	Uncharacterized protein.	Rhodanese domain-containing protein.	0.954
CU098_001957	CU098_003874	A0A367KLI3	A0A367IJG9	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.958
CU098_001957	CU098_007946	A0A367KLI3	A0A367JSC2	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.945
CU098_001957	CU098_008110	A0A367KLI3	A0A367KYG2	Uncharacterized protein.	Uncharacterized protein.	0.958
CU098_001957	ERT1_5	A0A367KLI3	A0A367KUV5	Uncharacterized protein.	Transcriptional regulator of nonfermentable carbon utilization.	0.939
CU098_001957	MRPL23	A0A367KLI3	A0A367J1R0	Uncharacterized protein.	54S ribosomal protein L23, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	0.947
CU098_001957	MRPL3	A0A367KLI3	A0A367IKB0	Uncharacterized protein.	54S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.946
CU098_001957	MRPL51	A0A367KLI3	A0A367IT63	Uncharacterized protein.	39S ribosomal protein L51, mitochondrial.	0.939
CU098_001957	SOD2_1	A0A367KLI3	A0A367JRK1	Uncharacterized protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.961
CU098_001957	SOD2_2	A0A367KLI3	A0A367KM47	Uncharacterized protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.961