SEC1_2 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEC1_2

Vacuolar sorting protein VPS33/slp1; Belongs to the STXBP/unc-18/SEC1 family. (586 aa)

Predicted Functional Partners:

SEC9_1

0.925

SEC9_2

0.925

SSO2_3

0.912

SSO2_5

0.912

SSO2_1

0.912

SSO2_2

0.912

SSO2_4

0.891

SEC6

0.786

EXO70

0.707

CU098_003509

0.692

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CU098_003509	EXO70	A0A367KTH5	A0A367JYK8	GRIP domain-containing protein.	Exocyst complex protein EXO70; Involved in the secretory pathway as part of the exocyst complex which tethers secretory vesicles to the sites of exocytosis. Also plays a role in the assembly of the exocyst. Belongs to the EXO70 family.	0.824
CU098_003509	SEC1_2	A0A367KTH5	A0A367JAV9	GRIP domain-containing protein.	Vacuolar sorting protein VPS33/slp1; Belongs to the STXBP/unc-18/SEC1 family.	0.692
CU098_003509	SEC9_1	A0A367KTH5	A0A367KBS3	GRIP domain-containing protein.	Protein transport protein S9 plasma membrane t-SNARE.	0.734
CU098_003509	SEC9_2	A0A367KTH5	A0A367KSI5	GRIP domain-containing protein.	Protein transport protein S9 plasma membrane t-SNARE.	0.734
CU098_003509	SSO2_1	A0A367KTH5	A0A367IWH7	GRIP domain-containing protein.	Syntaxin.	0.649
CU098_003509	SSO2_2	A0A367KTH5	A0A367JSV0	GRIP domain-containing protein.	Syntaxin.	0.649
CU098_003509	SSO2_3	A0A367KTH5	A0A367ILC8	GRIP domain-containing protein.	Syntaxin.	0.649
CU098_003509	SSO2_4	A0A367KTH5	A0A367JFE1	GRIP domain-containing protein.	Syntaxin; Belongs to the syntaxin family.	0.649
CU098_003509	SSO2_5	A0A367KTH5	A0A367IR95	GRIP domain-containing protein.	Syntaxin; Belongs to the syntaxin family.	0.649
EXO70	CU098_003509	A0A367JYK8	A0A367KTH5	Exocyst complex protein EXO70; Involved in the secretory pathway as part of the exocyst complex which tethers secretory vesicles to the sites of exocytosis. Also plays a role in the assembly of the exocyst. Belongs to the EXO70 family.	GRIP domain-containing protein.	0.824
EXO70	SEC1_2	A0A367JYK8	A0A367JAV9	Exocyst complex protein EXO70; Involved in the secretory pathway as part of the exocyst complex which tethers secretory vesicles to the sites of exocytosis. Also plays a role in the assembly of the exocyst. Belongs to the EXO70 family.	Vacuolar sorting protein VPS33/slp1; Belongs to the STXBP/unc-18/SEC1 family.	0.707
EXO70	SEC6	A0A367JYK8	A0A367KQC6	Exocyst complex protein EXO70; Involved in the secretory pathway as part of the exocyst complex which tethers secretory vesicles to the sites of exocytosis. Also plays a role in the assembly of the exocyst. Belongs to the EXO70 family.	SNARE-binding exocyst subunit S6.	0.999
EXO70	SEC9_1	A0A367JYK8	A0A367KBS3	Exocyst complex protein EXO70; Involved in the secretory pathway as part of the exocyst complex which tethers secretory vesicles to the sites of exocytosis. Also plays a role in the assembly of the exocyst. Belongs to the EXO70 family.	Protein transport protein S9 plasma membrane t-SNARE.	0.691
EXO70	SEC9_2	A0A367JYK8	A0A367KSI5	Exocyst complex protein EXO70; Involved in the secretory pathway as part of the exocyst complex which tethers secretory vesicles to the sites of exocytosis. Also plays a role in the assembly of the exocyst. Belongs to the EXO70 family.	Protein transport protein S9 plasma membrane t-SNARE.	0.691
EXO70	SSO2_1	A0A367JYK8	A0A367IWH7	Exocyst complex protein EXO70; Involved in the secretory pathway as part of the exocyst complex which tethers secretory vesicles to the sites of exocytosis. Also plays a role in the assembly of the exocyst. Belongs to the EXO70 family.	Syntaxin.	0.486
EXO70	SSO2_2	A0A367JYK8	A0A367JSV0	Exocyst complex protein EXO70; Involved in the secretory pathway as part of the exocyst complex which tethers secretory vesicles to the sites of exocytosis. Also plays a role in the assembly of the exocyst. Belongs to the EXO70 family.	Syntaxin.	0.486
EXO70	SSO2_3	A0A367JYK8	A0A367ILC8	Exocyst complex protein EXO70; Involved in the secretory pathway as part of the exocyst complex which tethers secretory vesicles to the sites of exocytosis. Also plays a role in the assembly of the exocyst. Belongs to the EXO70 family.	Syntaxin.	0.486
EXO70	SSO2_4	A0A367JYK8	A0A367JFE1	Exocyst complex protein EXO70; Involved in the secretory pathway as part of the exocyst complex which tethers secretory vesicles to the sites of exocytosis. Also plays a role in the assembly of the exocyst. Belongs to the EXO70 family.	Syntaxin; Belongs to the syntaxin family.	0.482
EXO70	SSO2_5	A0A367JYK8	A0A367IR95	Exocyst complex protein EXO70; Involved in the secretory pathway as part of the exocyst complex which tethers secretory vesicles to the sites of exocytosis. Also plays a role in the assembly of the exocyst. Belongs to the EXO70 family.	Syntaxin; Belongs to the syntaxin family.	0.486
SEC1_2	CU098_003509	A0A367JAV9	A0A367KTH5	Vacuolar sorting protein VPS33/slp1; Belongs to the STXBP/unc-18/SEC1 family.	GRIP domain-containing protein.	0.692