NSUN5 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

NSUN5

Putative 28S rRNA (Cytosine-C(5))-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (421 aa)

Predicted Functional Partners:

CU098_007214

0.921

WDR74_1

0.882

WDR74_2

0.882

NIP7

0.861

CU098_000519

0.853

CU098_010983

0.850

CU098_013959

0.842

PES1_1

0.841

PES1_2

0.841

BRX1

0.840

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRX1	CU098_007214	A0A367KPR1	A0A367INA4	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	Brix domain-containing protein.	0.984
BRX1	CU098_010983	A0A367KPR1	A0A367JSH7	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	RRM domain-containing protein.	0.994
BRX1	NIP7	A0A367KPR1	A0A367INW3	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	Ribosome biosynthesis protein nip7.	0.994
BRX1	NSUN5	A0A367KPR1	A0A367JC52	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	Putative 28S rRNA (Cytosine-C(5))-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.840
BRX1	PES1_1	A0A367KPR1	A0A367JLF6	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	mRNA-binding ribosome synthesis protein.	0.967
BRX1	PES1_2	A0A367KPR1	A0A367KKC5	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.967
BRX1	WDR74_1	A0A367KPR1	A0A367JRB8	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	WD repeat-containing protein 74.	0.981
BRX1	WDR74_2	A0A367KPR1	A0A367JU61	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	WD repeat-containing protein 74.	0.981
CU098_000519	NSUN5	A0A367KP40	A0A367JC52	Uncharacterized protein.	Putative 28S rRNA (Cytosine-C(5))-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.853
CU098_007214	BRX1	A0A367INA4	A0A367KPR1	Brix domain-containing protein.	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	0.984
CU098_007214	CU098_010983	A0A367INA4	A0A367JSH7	Brix domain-containing protein.	RRM domain-containing protein.	0.985
CU098_007214	NIP7	A0A367INA4	A0A367INW3	Brix domain-containing protein.	Ribosome biosynthesis protein nip7.	0.977
CU098_007214	NSUN5	A0A367INA4	A0A367JC52	Brix domain-containing protein.	Putative 28S rRNA (Cytosine-C(5))-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.921
CU098_007214	PES1_1	A0A367INA4	A0A367JLF6	Brix domain-containing protein.	mRNA-binding ribosome synthesis protein.	0.974
CU098_007214	PES1_2	A0A367INA4	A0A367KKC5	Brix domain-containing protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.983
CU098_007214	WDR74_1	A0A367INA4	A0A367JRB8	Brix domain-containing protein.	WD repeat-containing protein 74.	0.981
CU098_007214	WDR74_2	A0A367INA4	A0A367JU61	Brix domain-containing protein.	WD repeat-containing protein 74.	0.981
CU098_010983	BRX1	A0A367JSH7	A0A367KPR1	RRM domain-containing protein.	RNA-binding protein required for bioproteinsis of the ribosomal 60S subunit; Belongs to the cyclin family.	0.994
CU098_010983	CU098_007214	A0A367JSH7	A0A367INA4	RRM domain-containing protein.	Brix domain-containing protein.	0.985
CU098_010983	NIP7	A0A367JSH7	A0A367INW3	RRM domain-containing protein.	Ribosome biosynthesis protein nip7.	0.994