STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CU098_008886Uncharacterized protein. (290 aa)    
Predicted Functional Partners:
CU098_010360
UBX domain-containing protein.
   
 0.924
CU098_001470
UAS domain-containing protein.
    
 0.923
CU098_013855
UBX domain-containing protein.
    
 0.923
CDC48_1
AAA ATPase cdc48; Belongs to the AAA ATPase family.
   
 0.907
CDC48_3
AAA ATPase cdc48; Belongs to the AAA ATPase family.
   
 0.907
CDC48_2
AAA ATPase cdc48.
   
 0.907
CU098_000465
AAA domain-containing protein.
   
 0.907
CU098_013402
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 0.907
CU098_013367
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 0.907
CU098_007232
UBX domain-containing protein.
   
 0.896
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.