CU098_007155 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CU098_007155

Uncharacterized protein. (307 aa)

Predicted Functional Partners:

CU098_004432

0.980

CU098_003320

0.980

CU098_009343

0.980

CUL3

0.980

UBC9

0.959

CU098_002715

0.924

CRP79

0.817

PSMC2_2

0.746

PSMC2_1

0.746

PSMC5_1

0.744

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRP79	CU098_002715	A0A367J4J6	A0A367IIB8	Poly(A) binding protein Crp79.	Uncharacterized protein.	0.811
CRP79	CU098_003320	A0A367J4J6	A0A367JGT1	Poly(A) binding protein Crp79.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.862
CRP79	CU098_004432	A0A367J4J6	A0A367JBW4	Poly(A) binding protein Crp79.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.862
CRP79	CU098_007155	A0A367J4J6	A0A367JFY6	Poly(A) binding protein Crp79.	Uncharacterized protein.	0.817
CRP79	CU098_009343	A0A367J4J6	A0A367JIK6	Poly(A) binding protein Crp79.	Cullin domain-containing protein; Belongs to the cullin family.	0.862
CRP79	CUL3	A0A367J4J6	A0A367KQT4	Poly(A) binding protein Crp79.	Cullin-3; Belongs to the cullin family.	0.862
CRP79	PSMC2_1	A0A367J4J6	A0A367KRD2	Poly(A) binding protein Crp79.	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.978
CRP79	PSMC2_2	A0A367J4J6	A0A367J715	Poly(A) binding protein Crp79.	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.978
CRP79	PSMC5_1	A0A367J4J6	A0A367IJ56	Poly(A) binding protein Crp79.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.969
CRP79	UBC9	A0A367J4J6	A0A367JZT7	Poly(A) binding protein Crp79.	E2 SUMO-conjugating protein ubc9.	0.969
CU098_002715	CRP79	A0A367IIB8	A0A367J4J6	Uncharacterized protein.	Poly(A) binding protein Crp79.	0.811
CU098_002715	CU098_007155	A0A367IIB8	A0A367JFY6	Uncharacterized protein.	Uncharacterized protein.	0.924
CU098_002715	PSMC2_1	A0A367IIB8	A0A367KRD2	Uncharacterized protein.	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.650
CU098_002715	PSMC2_2	A0A367IIB8	A0A367J715	Uncharacterized protein.	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.650
CU098_002715	PSMC5_1	A0A367IIB8	A0A367IJ56	Uncharacterized protein.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.648
CU098_003320	CRP79	A0A367JGT1	A0A367J4J6	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Poly(A) binding protein Crp79.	0.862
CU098_003320	CU098_007155	A0A367JGT1	A0A367JFY6	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.980
CU098_003320	PSMC2_1	A0A367JGT1	A0A367KRD2	CULLIN_2 domain-containing protein; Belongs to the cullin family.	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.741
CU098_003320	PSMC2_2	A0A367JGT1	A0A367J715	CULLIN_2 domain-containing protein; Belongs to the cullin family.	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.741
CU098_003320	PSMC5_1	A0A367JGT1	A0A367IJ56	CULLIN_2 domain-containing protein; Belongs to the cullin family.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.728