STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU098_002468Uncharacterized protein. (654 aa)    
Predicted Functional Partners:
PRP16_1
DEAH-box RNA helicase prp16.
 
 
 0.981
CU098_002193
WD_REPEATS_REGION domain-containing protein.
   
 0.971
CU098_000994
CID domain-containing protein.
   
 0.969
UTP25
rRNA-binding ribosome biosynthesis protein utp25.
   
 0.940
MIS3
Ribosomal RNA assembly protein mis3.
   
 0.936
PRP18
mRNA splicing protein prp18.
    
 0.931
CU098_011094
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.931
SUB2
Suppressor of the cold-sensitive snRNP bioproteinsis mutant brr1-1.
   
 0.927
CU098_010143
Uncharacterized protein.
    
 0.923
SNRPA1
U2 small nuclear ribonucleoprotein A.
    
 0.921
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.