STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CU098_003909SH3 domain-containing protein. (713 aa)    
Predicted Functional Partners:
ATG8_1
Autophagy-related protein.
   
 
 0.881
ATG8_2
Autophagy-related protein.
   
 
 0.881
ATG9
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
    
 
 0.869
TFB1
RNA polymerase II transcription factor B subunit 1.
    
   0.762
CU098_003932
Uncharacterized protein.
   
 
 0.674
CU098_011926
Uncharacterized protein.
   
 
 0.674
ATG1
Serine/threonine-protein kinase.
    
 
 0.671
AMS1_1
Glycoside hydrolase, 38 vacuolar alpha mannosidase.
   
 
 0.609
AMS1_3
Glycoside hydrolase, 38 vacuolar alpha mannosidase.
   
 
 0.609
AMS1_2
Glycoside hydrolase, 38 vacuolar alpha mannosidase.
   
 
 0.609
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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