STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU098_002654WD_REPEATS_REGION domain-containing protein. (307 aa)    
Predicted Functional Partners:
SEC23
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.859
SFB3_3
COPII coat Sec23p-Sfb3p heterodimer component.
   
 0.770
SFB3_1
COPII coat Sec23p-Sfb3p heterodimer component.
   
 0.770
BOS1
Protein transport protein bos1.
     
 0.758
CU098_012594
L-type lectin-like domain-containing protein.
   
 0.736
CU098_005654
L-type lectin-like domain-containing protein.
   
 0.736
SEC24_3
COPII subunit.
   
 
 0.726
SEC24_5
COPII subunit.
   
 
 0.726
SFB3_2
COPII coat Sec23p-Sfb3p heterodimer component.
   
 
 0.722
EMP24
P24 complex component.
     
 0.721
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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