RPS19_3 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RPS19_3

40S ribosomal protein S19. (132 aa)

Predicted Functional Partners:

RPS29

0.997

RPS13

0.997

RPS7

0.997

CU098_004555

0.996

RPS3_1

0.992

RPS16

0.992

RPS9_2

0.992

RPS28A_2

0.992

RPS3_2

0.992

RPS15_1

0.992

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CU098_004555	RPS13	A0A367JER3	A0A367KW64	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family.	0.999
CU098_004555	RPS15_1	A0A367JER3	A0A367JQ43	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.997
CU098_004555	RPS16	A0A367JER3	A0A367IU29	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.998
CU098_004555	RPS19_3	A0A367JER3	A0A367JS04	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S19.	0.996
CU098_004555	RPS28A_2	A0A367JER3	A0A367JNV1	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S28.	0.997
CU098_004555	RPS29	A0A367JER3	A0A367K1R3	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S29.	0.998
CU098_004555	RPS3_1	A0A367JER3	A0A367IRA4	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S3.	0.998
CU098_004555	RPS3_2	A0A367JER3	A0A367JPN4	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S3.	0.998
CU098_004555	RPS7	A0A367JER3	A0A367KWH8	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
CU098_004555	RPS9_2	A0A367JER3	A0A367J7J5	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S9.	0.997
RPS13	CU098_004555	A0A367KW64	A0A367JER3	Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
RPS13	RPS15_1	A0A367KW64	A0A367JQ43	Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family.	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.998
RPS13	RPS16	A0A367KW64	A0A367IU29	Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family.	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.998
RPS13	RPS19_3	A0A367KW64	A0A367JS04	Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family.	40S ribosomal protein S19.	0.997
RPS13	RPS28A_2	A0A367KW64	A0A367JNV1	Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family.	40S ribosomal protein S28.	0.998
RPS13	RPS29	A0A367KW64	A0A367K1R3	Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family.	40S ribosomal protein S29.	0.999
RPS13	RPS3_1	A0A367KW64	A0A367IRA4	Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family.	40S ribosomal protein S3.	0.998
RPS13	RPS3_2	A0A367KW64	A0A367JPN4	Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family.	40S ribosomal protein S3.	0.998
RPS13	RPS7	A0A367KW64	A0A367KWH8	Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
RPS13	RPS9_2	A0A367KW64	A0A367J7J5	Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family.	40S ribosomal protein S9.	0.998