STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CU098_000992Uncharacterized protein. (259 aa)    
Predicted Functional Partners:
MSH4
MutS protein msh4.
   
  
 0.598
MLH3
DNA mismatch repair protein.
    
 
 0.593
MPH1_1
3'-5' DNA helicase.
      
 0.564
MPH1_2
3'-5' DNA helicase.
      
 0.564
SPO11_1
Endodeoxyribonuclease.
   
  
 0.552
SPO11_2
Endodeoxyribonuclease.
   
  
 0.552
MCM6
DNA helicase; Belongs to the MCM family.
   
  
 0.526
MER3
Sec63.
   
 
 0.500
ASCC3_1
Activating signal cointegrator 1 complex subunit.
   
 
 0.499
ASCC3_2
Activating signal cointegrator 1 complex subunit.
   
 
 0.499
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.