CU098_007946 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CU098_007946

Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (147 aa)

Predicted Functional Partners:

RPL32

0.997

RPL35

0.997

RPL5

0.997

CU098_003874

0.996

MRPL3

0.996

MRPL39_1

0.996

CU098_001703

0.996

RPL28_3

0.996

CU098_009982

0.996

CU098_013251

0.996

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CU098_001703	CU098_003874	A0A367JCA5	A0A367IJG9	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.997
CU098_001703	CU098_007946	A0A367JCA5	A0A367JSC2	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.996
CU098_001703	CU098_009982	A0A367JCA5	A0A367KUT5	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.996
CU098_001703	CU098_013251	A0A367JCA5	A0A367KX28	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.	0.996
CU098_001703	MRPL3	A0A367JCA5	A0A367IKB0	Uncharacterized protein.	54S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.995
CU098_001703	MRPL39_1	A0A367JCA5	A0A367IX02	Uncharacterized protein.	54S ribosomal protein L39, mitochondrial.	0.997
CU098_001703	RPL35	A0A367JCA5	A0A367J929	Uncharacterized protein.	60S ribosomal protein L35.	0.996
CU098_001703	RPL5	A0A367JCA5	A0A367K684	Uncharacterized protein.	60S ribosomal protein L5.	0.996
CU098_003874	CU098_001703	A0A367IJG9	A0A367JCA5	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.997
CU098_003874	CU098_007946	A0A367IJG9	A0A367JSC2	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.996
CU098_003874	CU098_009982	A0A367IJG9	A0A367KUT5	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.997
CU098_003874	CU098_013251	A0A367IJG9	A0A367KX28	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.	0.996
CU098_003874	MRPL3	A0A367IJG9	A0A367IKB0	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	54S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.995
CU098_003874	MRPL39_1	A0A367IJG9	A0A367IX02	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	54S ribosomal protein L39, mitochondrial.	0.997
CU098_003874	RPL35	A0A367IJG9	A0A367J929	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	60S ribosomal protein L35.	0.997
CU098_003874	RPL5	A0A367IJG9	A0A367K684	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	60S ribosomal protein L5.	0.997
CU098_007946	CU098_001703	A0A367JSC2	A0A367JCA5	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.996
CU098_007946	CU098_003874	A0A367JSC2	A0A367IJG9	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.996
CU098_007946	CU098_009982	A0A367JSC2	A0A367KUT5	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.996
CU098_007946	CU098_013251	A0A367JSC2	A0A367KX28	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.	0.996