CU098_000477 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CU098_000477

Uncharacterized protein. (444 aa)

Predicted Functional Partners:

CU098_013251

0.826

CU098_007946

0.800

MRPL3

0.798

GRX5

0.788

CU098_009469

0.754

CU098_009006

0.754

CU098_013135

0.754

CU098_007013

0.744

CU098_003874

0.738

RPS13

0.730

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CU098_000477	CU098_003874	A0A367K081	A0A367IJG9	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.738
CU098_000477	CU098_007013	A0A367K081	A0A367IPV8	Uncharacterized protein.	RF_PROK_I domain-containing protein.	0.744
CU098_000477	CU098_007946	A0A367K081	A0A367JSC2	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.800
CU098_000477	CU098_009006	A0A367K081	A0A367JNN9	Uncharacterized protein.	Tyrosine--tRNA ligase.	0.754
CU098_000477	CU098_009469	A0A367K081	A0A367JM60	Uncharacterized protein.	tRNA-binding domain-containing protein.	0.754
CU098_000477	CU098_013135	A0A367K081	A0A367KU83	Uncharacterized protein.	tRNA-binding domain-containing protein.	0.754
CU098_000477	CU098_013251	A0A367K081	A0A367KX28	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.	0.826
CU098_000477	GRX5	A0A367K081	A0A367IJ49	Uncharacterized protein.	Glutaredoxin; Belongs to the glutaredoxin family. Monothiol subfamily.	0.788
CU098_000477	MRPL3	A0A367K081	A0A367IKB0	Uncharacterized protein.	54S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.798
CU098_000477	RPS13	A0A367K081	A0A367KW64	Uncharacterized protein.	Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family.	0.730
CU098_003874	CU098_000477	A0A367IJG9	A0A367K081	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.738
CU098_003874	CU098_007013	A0A367IJG9	A0A367IPV8	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	RF_PROK_I domain-containing protein.	0.980
CU098_003874	CU098_007946	A0A367IJG9	A0A367JSC2	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.996
CU098_003874	CU098_009006	A0A367IJG9	A0A367JNN9	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Tyrosine--tRNA ligase.	0.460
CU098_003874	CU098_009469	A0A367IJG9	A0A367JM60	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	tRNA-binding domain-containing protein.	0.460
CU098_003874	CU098_013135	A0A367IJG9	A0A367KU83	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	tRNA-binding domain-containing protein.	0.460
CU098_003874	CU098_013251	A0A367IJG9	A0A367KX28	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.	0.996
CU098_003874	MRPL3	A0A367IJG9	A0A367IKB0	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	54S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.995
CU098_003874	RPS13	A0A367IJG9	A0A367KW64	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family.	0.995
CU098_007013	CU098_000477	A0A367IPV8	A0A367K081	RF_PROK_I domain-containing protein.	Uncharacterized protein.	0.744