STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU098_009024PARP-type domain-containing protein. (223 aa)    
Predicted Functional Partners:
CU098_003031
Uncharacterized protein.
    
  0.794
CU098_006115
Ubiquitin-like domain-containing protein.
    
 0.768
UBC9
E2 SUMO-conjugating protein ubc9.
    
 0.766
CU098_012376
Uncharacterized protein.
    
 0.766
RFA2
Replication factor A protein 2.
    
 0.766
CU098_007150
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 
 0.759
CU098_008556
Uncharacterized protein.
    
 
 0.754
WDR76
WD repeat-containing protein 76.
    
 0.754
CU098_000941
WD_REPEATS_REGION domain-containing protein.
    
 0.754
ERCC1
Excision repair cross-complementation group 1.
     
 0.721
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.