STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU098_004735RING-type domain-containing protein. (876 aa)    
Predicted Functional Partners:
CU098_008586
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 0.916
YOS9
Protein OS-9.
   
 0.915
CU098_007531
Uncharacterized protein.
   
 0.830
CU098_004805
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 0.830
HRD1_2
E3 ubiquitin-protein ligase hrd1.
    
 0.768
HRD1_1
E3 ubiquitin-protein ligase hrd1.
    
 0.768
CU098_004485
Uncharacterized protein.
    
 0.768
CU098_013225
RING-type domain-containing protein.
    
 0.768
CU098_011215
Uncharacterized protein.
    
   0.711
CDC48_1
AAA ATPase cdc48; Belongs to the AAA ATPase family.
   
 0.639
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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