STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU098_004907SEC7 domain-containing protein. (445 aa)    
Predicted Functional Partners:
CU098_007912
PH_9 domain-containing protein.
     
 0.729
CU098_000803
PH domain-containing protein.
     
 0.729
CU098_006382
SEC7 domain-containing protein.
     
 0.729
CU098_000814
SEC7 domain-containing protein.
  
  
 
0.686
CU098_008770
Uncharacterized protein.
  
  
 
0.672
ARF6_1
ADP-ribosylation factor, Arf Arf6.
    
 
 0.611
ARF6_2
ADP-ribosylation factor, Arf Arf6; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.611
ARF6_3
ADP-ribosylation factor, Arf Arf6; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.611
CU098_003885
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.429
ARF1
Arf GTPase arf1.
    
 
 0.429
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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