STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU098_010865Poly [ADP-ribose] polymerase. (579 aa)    
Predicted Functional Partners:
CU098_014009
ANK_REP_REGION domain-containing protein.
 
      0.893
CU098_014024
ANK_REP_REGION domain-containing protein.
 
  
   0.863
CU098_008556
Uncharacterized protein.
   
 
 0.838
CU098_003031
Uncharacterized protein.
    
 0.836
RFA2
Replication factor A protein 2.
   
 0.796
FEN1_1
Elongation of fatty acids protein 2.
   
 0.794
FEN1_2
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
   
 0.794
CU098_006115
Ubiquitin-like domain-containing protein.
    
 0.782
UBC9
E2 SUMO-conjugating protein ubc9.
    
 0.777
CU098_012376
Uncharacterized protein.
    
 0.766
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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