STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRP5_1Pre-mRNA processing RNA-helicase; Belongs to the DEAD box helicase family. (530 aa)    
Predicted Functional Partners:
CU098_000994
CID domain-containing protein.
   
 0.997
PHF5A
PHD finger-like domain-containing protein 5A.
    
 0.989
PRP21
SF3a splicing factor complex subunit.
   
 0.987
SNRPA1
U2 small nuclear ribonucleoprotein A.
    
 0.987
CU098_010143
Uncharacterized protein.
   
 0.986
SMD3
Small nuclear ribonucleoprotein Sm D3.
    
 0.983
SF3B1_1
Splicing factor 3B subunit 1.
   
 0.982
SF3B1_2
Splicing factor 3B subunit 1.
   
 0.982
CU098_006833
Matrin-type domain-containing protein.
   
 0.981
CU098_001852
Matrin-type domain-containing protein.
   
 0.981
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.