STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU098_011950SWIB domain-containing protein. (250 aa)    
Predicted Functional Partners:
PBRM1
Protein polybromo-1.
    
 0.966
TOP1
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...]
    
   0.865
CU098_009329
Uncharacterized protein.
   
 0.818
SNF5_1
SWI/SNF chromatin-remodeling complex subunit.
   
 0.818
SNF5_2
SWI/SNF chromatin-remodeling complex subunit.
   
 0.818
SNF5_3
SWI/SNF chromatin-remodeling complex subunit.
   
 0.818
CU098_003811
Uncharacterized protein.
   
 0.818
SMARCB1
SWI SNF, matrix associated, actin dependent regulator of chromatin, sub b, member 1.
   
 0.818
RSC9_4
Chromatin structure-remodeling complex protein rsc9.
   
 0.792
RSC9_2
Chromatin structure-remodeling complex protein rsc9.
   
 0.792
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.