CU098_001259 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CU098_001259

Peptidase_S8 domain-containing protein. (248 aa)

Predicted Functional Partners:

CU098_008444

0.687

CU098_013197

0.601

CU098_007637

0.534

CU098_010512

0.534

CU098_007640

0.534

CU098_001964

0.532

CU098_010616

0.532

MED7

0.517

CU098_001819

0.513

CU098_005093

0.513

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CU098_001259	CU098_001819	A0A367KJN4	A0A367IRA7	Peptidase_S8 domain-containing protein.	Glyco_hydro_20 domain-containing protein.	0.513
CU098_001259	CU098_001964	A0A367KJN4	A0A367IT84	Peptidase_S8 domain-containing protein.	Uncharacterized protein.	0.532
CU098_001259	CU098_005093	A0A367KJN4	A0A367JMR6	Peptidase_S8 domain-containing protein.	Beta-hexosaminidase.	0.513
CU098_001259	CU098_007637	A0A367KJN4	A0A367KBT5	Peptidase_S8 domain-containing protein.	Uncharacterized protein.	0.534
CU098_001259	CU098_007640	A0A367KJN4	A0A367KRH3	Peptidase_S8 domain-containing protein.	Uncharacterized protein.	0.534
CU098_001259	CU098_008444	A0A367KJN4	A0A367J3R5	Peptidase_S8 domain-containing protein.	Uncharacterized protein.	0.687
CU098_001259	CU098_010512	A0A367KJN4	A0A367KNC4	Peptidase_S8 domain-containing protein.	Uncharacterized protein.	0.534
CU098_001259	CU098_010616	A0A367KJN4	A0A367KYK0	Peptidase_S8 domain-containing protein.	Uncharacterized protein.	0.532
CU098_001259	CU098_013197	A0A367KJN4	A0A367KU33	Peptidase_S8 domain-containing protein.	RQC domain-containing protein.	0.601
CU098_001259	MED7	A0A367KJN4	A0A367KQJ7	Peptidase_S8 domain-containing protein.	Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery.	0.517
CU098_001819	CU098_001259	A0A367IRA7	A0A367KJN4	Glyco_hydro_20 domain-containing protein.	Peptidase_S8 domain-containing protein.	0.513
CU098_001819	CU098_001964	A0A367IRA7	A0A367IT84	Glyco_hydro_20 domain-containing protein.	Uncharacterized protein.	0.425
CU098_001819	CU098_010616	A0A367IRA7	A0A367KYK0	Glyco_hydro_20 domain-containing protein.	Uncharacterized protein.	0.425
CU098_001964	CU098_001259	A0A367IT84	A0A367KJN4	Uncharacterized protein.	Peptidase_S8 domain-containing protein.	0.532
CU098_001964	CU098_001819	A0A367IT84	A0A367IRA7	Uncharacterized protein.	Glyco_hydro_20 domain-containing protein.	0.425
CU098_001964	CU098_005093	A0A367IT84	A0A367JMR6	Uncharacterized protein.	Beta-hexosaminidase.	0.425
CU098_001964	CU098_008444	A0A367IT84	A0A367J3R5	Uncharacterized protein.	Uncharacterized protein.	0.684
CU098_001964	CU098_010616	A0A367IT84	A0A367KYK0	Uncharacterized protein.	Uncharacterized protein.	0.806
CU098_005093	CU098_001259	A0A367JMR6	A0A367KJN4	Beta-hexosaminidase.	Peptidase_S8 domain-containing protein.	0.513
CU098_005093	CU098_001964	A0A367JMR6	A0A367IT84	Beta-hexosaminidase.	Uncharacterized protein.	0.425