STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMARCB1SWI SNF, matrix associated, actin dependent regulator of chromatin, sub b, member 1. (273 aa)    
Predicted Functional Partners:
PBRM1
Protein polybromo-1.
    
 0.972
CU098_012248
BAF250_C domain-containing protein.
    
 
 0.943
SNF12
SWI/SNF complex component snf12.
   
 0.916
BAP60
SWI SNF-matrix-associated actin-dependent regulator of chromatin sub D.
   
 0.916
SMARCD1
SWI SNF, matrix associated, actin dependent regulator of chromatin, sub d, member 1.
   
 0.916
ARP4_1
NuA4 histone acetyltransferase subunit; Belongs to the actin family.
   
 0.905
ARP4_2
NuA4 histone acetyltransferase subunit; Belongs to the actin family.
   
 0.905
ACTL6B
Actin-like protein 6B; Belongs to the actin family.
   
 0.905
RSC9_4
Chromatin structure-remodeling complex protein rsc9.
    
 0.824
RSC9_2
Chromatin structure-remodeling complex protein rsc9.
    
 0.824
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.