STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RRP40Exosome non-catalytic core subunit rrp40. (190 aa)    
Predicted Functional Partners:
EXOSC7
Exosome complex component RRP42.
  
 0.995
EXOSC5
Exosome component 5.
  
 0.995
CU098_011695
RNase_PH domain-containing protein.
  
 0.995
RRP4_1
Exosome non-catalytic core subunit rrp4.
   
 0.994
CU098_002083
S1 motif domain-containing protein.
   
 0.994
RRP4_2
Exosome non-catalytic core subunit rrp4.
   
 0.994
CU098_013940
Uncharacterized protein.
   
 0.994
EXOSC4_2
Exosome complex component RRP41.
  
 0.992
EXOSC4_1
Exosome complex component RRP41.
  
 0.992
EXOSC9
Exosome complex component RRP45.
   
 0.990
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.