STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU098_012787Uncharacterized protein. (382 aa)    
Predicted Functional Partners:
CU098_010431
3'-5' exonuclease domain-containing protein.
   
 0.983
CU098_004720
3'-5' exonuclease domain-containing protein.
   
 0.983
RFA1_1
Replication factor A protein 1.
    
 0.969
RFA1_2
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
    
 0.969
CU098_006151
WD_REPEATS_REGION domain-containing protein.
   
 
 0.954
CU098_001574
WD_REPEATS_REGION domain-containing protein.
   
 
 0.954
SGS1
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
   
 0.952
EXO1
Rad2 nuclease.
   
 0.949
RFA2
Replication factor A protein 2.
   
 0.904
FEN1_1
Elongation of fatty acids protein 2.
   
 0.901
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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