STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC16_4Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family. (598 aa)    
Predicted Functional Partners:
SEC13
GTPase-activating protein S13; Belongs to the WD repeat SEC13 family.
    
 0.983
SEC23
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.978
SFB3_3
COPII coat Sec23p-Sfb3p heterodimer component.
   
 0.933
SFB3_1
COPII coat Sec23p-Sfb3p heterodimer component.
   
 0.933
SFB3_2
COPII coat Sec23p-Sfb3p heterodimer component.
   
 0.917
SEC24_3
COPII subunit.
   
 0.917
SEC24_5
COPII subunit.
   
 0.917
SEC31_2
Protein transport protein S31.
   
 0.859
SEC31_3
Protein transport protein S31.
   
 0.859
SEC31_1
Protein transport protein S31.
   
 0.859
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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