STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU098_012960Uncharacterized protein. (143 aa)    
Predicted Functional Partners:
CU098_009982
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.992
CU098_008268
Uncharacterized protein.
   
 
 0.984
MRPL17
54S ribosomal protein L17 mitochondrial.
   
 
 0.977
CU098_011831
Ribosomal_L30 domain-containing protein.
   
 
 0.976
CU098_003874
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.975
MRPL23
54S ribosomal protein L23, mitochondrial; Belongs to the universal ribosomal protein uL13 family.
   
 
 0.975
CU098_007013
RF_PROK_I domain-containing protein.
   
 
 0.973
RSM10
Mitochondrial 37S ribosomal protein rsm10.
   
 
 0.973
CU098_001703
Uncharacterized protein.
   
 
 0.971
MRPL46
39S ribosomal protein L46, mitochondrial; Belongs to the Nudix hydrolase family.
   
 
 0.970
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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