STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA76029.1Outer membrane protein TolC. (483 aa)    
Predicted Functional Partners:
SKA76023.1
Multidrug resistance efflux pump.
  0.979
SKA76017.1
ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain.
 
 
 0.958
SKA75733.1
Phosphate-selective porin.
  
     0.627
SKA99663.1
Protein of unknown function.
  
     0.621
SKA76013.1
LysR family transcriptional regulator, transcriptional activator of nhaA; Belongs to the LysR transcriptional regulatory family.
       0.539
SKA86322.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.513
SKB01814.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.513
SKA77325.1
Barrel-sandwich domain of CusB or HlyD membrane-fusion.
   
  0.489
SKA98361.1
HlyD family secretion protein.
   
  0.489
SKB05717.1
Putative peptide zinc metalloprotease protein.
   
  0.489
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.