STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA76097.1Serine phosphatase RsbU, regulator of sigma subunit. (481 aa)    
Predicted Functional Partners:
SKA80276.1
Signal transduction histidine kinase.
 
 0.992
SKA93198.1
PAS domain S-box-containing protein.
 
 0.984
SKA92239.1
GAF domain-containing protein.
 
 0.954
SKA76096.1
Anti-anti-sigma factor.
  
 0.945
SKA82657.1
PAS domain S-box-containing protein.
 0.944
SKA78054.1
PAS domain S-box-containing protein.
 
 0.929
SKB06440.1
PAS domain S-box-containing protein.
 
 0.923
SKA92254.1
PAS domain S-box-containing protein.
 
 0.920
SKA80378.1
PAS domain S-box-containing protein.
 
 0.919
SKA98019.1
PAS domain S-box-containing protein.
 
 0.919
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.