STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA76972.1Hypothetical protein. (250 aa)    
Predicted Functional Partners:
SKA76986.1
Hydroxyacylglutathione hydrolase.
     0.966
SKA76976.1
Rhodanese-related sulfurtransferase.
 
     0.836
SKA76967.1
Smr domain-containing protein.
       0.762
SKA76981.1
Intracellular sulfur oxidation protein, DsrE/DsrF family.
       0.757
SKA76989.1
Rhodanese-related sulfurtransferase.
 
     0.716
SKA76958.1
Hypothetical protein.
       0.655
SKA76963.1
Antitoxin ParD1/3/4.
       0.655
SKA76994.1
DNA-binding transcriptional regulator, ArsR family.
       0.467
queG
Epoxyqueuosine reductase; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family.
       0.465
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation; Belongs to the MurB family.
       0.411
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.