STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA77274.1CubicO group peptidase, beta-lactamase class C family. (390 aa)    
Predicted Functional Partners:
SKA77277.1
Tetratricopeptide repeat-containing protein.
       0.773
SKA80666.1
GMP synthase (glutamine-hydrolysing).
     
 0.604
SKA77269.1
Immunoglobulin domain-containing protein.
       0.572
SKA77280.1
Hypothetical protein.
       0.512
SKA86429.1
HAD-superfamily subfamily IB hydrolase, TIGR01490.
  
     0.494
SKB04126.1
Beta-lactamase class A.
  
  
 0.479
SKA88713.1
Fructokinase.
 
      0.475
SKA99342.1
Mannose-1-phosphate guanylyltransferase.
  
     0.416
SKA92670.1
3D (Asp-Asp-Asp) domain-containing protein.
  
     0.405
SKB08559.1
beta-N-acetylhexosaminidase.
  
 
  0.405
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.