STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA77346.1ABC-type transport system, involved in lipoprotein release, permease component. (383 aa)    
Predicted Functional Partners:
SKA77340.1
Putative ABC transport system permease protein.
 
     0.953
SKA77334.1
Putative ABC transport system ATP-binding protein.
 
  0.925
SKA77325.1
Barrel-sandwich domain of CusB or HlyD membrane-fusion.
 
     0.901
SKA92520.1
Protein of unknown function.
  
     0.678
SKA99578.1
SLA1 homology domain 1, SHD1.
  
     0.658
SKB03650.1
Protein of unknown function.
  
     0.628
SKB05428.1
SLA1 homology domain 1, SHD1.
  
     0.620
SKA77352.1
Hypothetical protein.
       0.610
SKA92754.1
Protein of unknown function.
  
     0.596
SKB08034.1
Protein of unknown function.
  
     0.560
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.