STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA77658.1Outer membrane assembly lipoprotein YfiO. (329 aa)    
Predicted Functional Partners:
SKA77653.1
Hypothetical protein.
       0.773
SKB06764.1
Signal peptidase I; Belongs to the peptidase S26 family.
   
  
 0.751
SKB04073.1
Beta-barrel assembly machine subunit BamA.
 
 
 0.734
SKA77608.1
Beta-barrel assembly machine subunit BamA.
 
 
 0.694
SKB03669.1
Organic solvent tolerance protein.
  
  
 0.677
SKB00499.1
Hypothetical protein.
  
    0.660
SKA75620.1
Cell division septal protein FtsQ.
 
     0.619
SKA77648.1
Outer membrane protein beta-barrel domain-containing protein.
       0.613
SKA77673.1
Rieske [2Fe-2S] domain-containing protein.
       0.613
SKB04072.1
Periplasmic chaperone for outer membrane proteins Skp.
 
   
 0.601
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.