STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA80062.1Transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (526 aa)    
Predicted Functional Partners:
SKB02341.1
N-acetylneuraminic acid mutarotase.
      0.900
SKA93198.1
PAS domain S-box-containing protein.
  
 
 0.867
SKB08246.1
Uncharacterized conserved protein YbbC, DUF1343 family.
     0.855
SKA80276.1
Signal transduction histidine kinase.
    
 0.826
SKA79697.1
Two-component system, cell cycle sensor histidine kinase and response regulator CckA.
  
 
 0.788
SKA82641.1
PAS domain S-box-containing protein.
  
 
 0.778
SKB09088.1
Response regulator receiver domain-containing protein.
  
 
 0.767
SKA82657.1
PAS domain S-box-containing protein.
  
 
 0.763
SKA92254.1
PAS domain S-box-containing protein.
   
 
 0.745
SKA78054.1
PAS domain S-box-containing protein.
   
 
 0.699
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.