SKA80100.1 protein (Prosthecobacter debontii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SKA80100.1

PH domain-containing protein. (172 aa)

Predicted Functional Partners:

SKA80105.1

0.773

SKA96597.1

0.642

SKB02253.1

0.599

SKA94298.1

0.589

SKB01666.1

0.586

SKB04229.1

0.584

SKA88169.1

0.583

SKA88747.1

0.578

SKA92332.1

0.578

SKB08406.1

0.568

Your Current Organism:

Prosthecobacter debontii

NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SKA80100.1	SKA80105.1	SAMN02745166_00583	SAMN02745166_00584	PH domain-containing protein.	Hypothetical protein.	0.773
SKA80100.1	SKA88169.1	SAMN02745166_00583	SAMN02745166_01376	PH domain-containing protein.	PEP-CTERM protein-sorting domain-containing protein.	0.583
SKA80100.1	SKA88747.1	SAMN02745166_00583	SAMN02745166_01479	PH domain-containing protein.	PEP-CTERM protein-sorting domain-containing protein.	0.578
SKA80100.1	SKA92332.1	SAMN02745166_00583	SAMN02745166_01880	PH domain-containing protein.	PEP-CTERM protein-sorting domain-containing protein.	0.578
SKA80100.1	SKA94298.1	SAMN02745166_00583	SAMN02745166_02133	PH domain-containing protein.	PEP-CTERM protein-sorting domain-containing protein.	0.589
SKA80100.1	SKA96597.1	SAMN02745166_00583	SAMN02745166_02431	PH domain-containing protein.	Thiamine kinase.	0.642
SKA80100.1	SKB01666.1	SAMN02745166_00583	SAMN02745166_03429	PH domain-containing protein.	CRISPR type III-B/RAMP module RAMP protein Cmr6.	0.586
SKA80100.1	SKB02253.1	SAMN02745166_00583	SAMN02745166_03598	PH domain-containing protein.	PD-(D/E)XK nuclease superfamily protein.	0.599
SKA80100.1	SKB04229.1	SAMN02745166_00583	SAMN02745166_04013	PH domain-containing protein.	PEP-CTERM protein-sorting domain-containing protein.	0.584
SKA80100.1	SKB08406.1	SAMN02745166_00583	SAMN02745166_04932	PH domain-containing protein.	PEP-CTERM protein-sorting domain-containing protein.	0.568
SKA80105.1	SKA80100.1	SAMN02745166_00584	SAMN02745166_00583	Hypothetical protein.	PH domain-containing protein.	0.773
SKA88169.1	SKA80100.1	SAMN02745166_01376	SAMN02745166_00583	PEP-CTERM protein-sorting domain-containing protein.	PH domain-containing protein.	0.583
SKA88169.1	SKA96597.1	SAMN02745166_01376	SAMN02745166_02431	PEP-CTERM protein-sorting domain-containing protein.	Thiamine kinase.	0.468
SKA88169.1	SKB01666.1	SAMN02745166_01376	SAMN02745166_03429	PEP-CTERM protein-sorting domain-containing protein.	CRISPR type III-B/RAMP module RAMP protein Cmr6.	0.765
SKA88747.1	SKA80100.1	SAMN02745166_01479	SAMN02745166_00583	PEP-CTERM protein-sorting domain-containing protein.	PH domain-containing protein.	0.578
SKA88747.1	SKA96597.1	SAMN02745166_01479	SAMN02745166_02431	PEP-CTERM protein-sorting domain-containing protein.	Thiamine kinase.	0.417
SKA88747.1	SKB01666.1	SAMN02745166_01479	SAMN02745166_03429	PEP-CTERM protein-sorting domain-containing protein.	CRISPR type III-B/RAMP module RAMP protein Cmr6.	0.767
SKA92332.1	SKA80100.1	SAMN02745166_01880	SAMN02745166_00583	PEP-CTERM protein-sorting domain-containing protein.	PH domain-containing protein.	0.578
SKA92332.1	SKA96597.1	SAMN02745166_01880	SAMN02745166_02431	PEP-CTERM protein-sorting domain-containing protein.	Thiamine kinase.	0.468
SKA92332.1	SKB01666.1	SAMN02745166_01880	SAMN02745166_03429	PEP-CTERM protein-sorting domain-containing protein.	CRISPR type III-B/RAMP module RAMP protein Cmr6.	0.769