STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA80521.1Oligopeptide transport system substrate-binding protein. (524 aa)    
Predicted Functional Partners:
SKA75496.1
Oligopeptide transport system permease protein.
 
 0.973
SKA99434.1
Oligopeptide transport system permease protein.
 
 0.961
SKA99428.1
Oligopeptide transport system permease protein.
 
 0.931
SKA75500.1
Peptide/nickel transport system permease protein.
 
 0.924
SKA80156.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.922
SKB07466.1
Peptide/nickel transport system ATP-binding protein.
 
 0.896
SKA75702.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.889
SKA80165.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.889
SKA80186.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
 0.849
SKA80180.1
Microcin C transport system permease protein.
 
 0.796
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.